Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/CENTRE
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo1 Linux (Ubuntu 24.04.3 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo1 Summary

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Package: CENTRE
Version: 0.99.3
RVersion: 4.6
BiocVersion: 3.23
BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CENTRE
BuildTime: 1 minutes 43.53 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: CENTRE_20251206212244
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: CENTRE. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

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* checking for file ‘CENTRE/DESCRIPTION’ ... OK
* preparing ‘CENTRE’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘CENTRE_vignette.Rmd’ using rmarkdown

Quitting from CENTRE_vignette.Rmd:253-259 [prediction]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `xgb.get.handle()`:
! 'xgb.Booster' object is corrupted or is from an incompatible XGBoost version.
---
Backtrace:
    ▆
 1. └─CENTRE::centrePrediction(celltype_features, generic_features)
 2.   ├─stats::predict(xgb_model, feature_matrix)
 3.   └─xgboost:::predict.xgb.Booster(xgb_model, feature_matrix)
 4.     └─xgboost:::xgb.best_iteration(object)
 5.       └─xgboost::xgb.attr(bst, "best_iteration")
 6.         └─xgboost:::xgb.get.handle(object)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CENTRE_vignette.Rmd' failed with diagnostics:
'xgb.Booster' object is corrupted or is from an incompatible XGBoost version.
--- failed re-building ‘CENTRE_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘CENTRE_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output
 
                    			
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