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URL:  https://git.bioconductor.org/packages/EMTscoreData
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo1 Linux (Ubuntu 24.04.3 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo1 Summary

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Package: EMTscoreData
Version: 0.99.2
RVersion: 4.6
BiocVersion: 3.23
BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data EMTscoreData
BuildTime: 31 minutes 10.48 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: EMTscoreData_20251217220937
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: EMTscoreData. Starting Build package.
PostProcessing: Finished Git clone. Package type: ExperimentData. Installing dependency status: 1. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

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* checking for file ‘EMTscoreData/DESCRIPTION’ ... OK
* preparing ‘EMTscoreData’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘EMTscoreData.Rmd’ using rmarkdown
trying URL 'https://zenodo.org/records/17917654/files/HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION.v2025.1.Hs.gmt'
Content type 'application/octet-stream' length 1307 bytes
==================================================
downloaded 1307 bytes


Quitting from EMTscoreData.Rmd:78-149 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'EMTscoreData.Rmd' failed with diagnostics:
The `slot` argument of `GetAssayData()` was deprecated in SeuratObject
5.0.0 and is now defunct.
i Please use the `layer` argument instead.
--- failed re-building ‘EMTscoreData.Rmd’

SUMMARY: processing the following file failed:
  ‘EMTscoreData.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output
 
                    			
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