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URL:  https://git.bioconductor.org/packages/spammR
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo1 Linux (Ubuntu 24.04.3 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo1 Summary

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Package: spammR
Version: 0.99.7
RVersion: 4.6
BiocVersion: 3.23
BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data spammR
BuildTime: 3 minutes 33.79 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: spammR_20260116000748
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: spammR. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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 R CMD BUILD

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* checking for file ‘spammR/DESCRIPTION’ ... OK
* preparing ‘spammR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘lipidProt.Rmd’ using rmarkdown

Quitting from lipidProt.Rmd:39-78 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `contrib.url()`:
! trying to use CRAN without setting a mirror
---
Backtrace:
    ▆
 1. └─utils::install.packages("geojsonR")
 2.   ├─base::startsWith(contriburl, "file:")
 3.   └─utils::contrib.url(repos, type)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'lipidProt.Rmd' failed with diagnostics:
trying to use CRAN without setting a mirror
--- failed re-building ‘lipidProt.Rmd’

--- re-building ‘spatMicrobiome.Rmd’ using rmarkdown
--- finished re-building ‘spatMicrobiome.Rmd’

--- re-building ‘spatProt.Rmd’ using rmarkdown
--- finished re-building ‘spatProt.Rmd’

SUMMARY: processing the following file failed:
  ‘lipidProt.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output
 
                    			
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