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URL: https://git.bioconductor.org/packages/MetaboAnnotatoR

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

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Package: MetaboAnnotatoR

Version: 0.99.13

RVersion: 4.6

BiocVersion: 3.23

BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MetaboAnnotatoR

BuildTime: 1 minutes 11.74 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: MetaboAnnotatoR_20260125213455

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: MetaboAnnotatoR. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘MetaboAnnotatoR/DESCRIPTION’ ... OK
* preparing ‘MetaboAnnotatoR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘MetaboAnnotatoR.Rmd’ using rmarkdown
Warning in in_dir(input_dir(), expr) :
  You changed the working directory to /tmp/RtmpmhT2G2 (probably via setwd()). It will be restored to /tmp/RtmpWfmc93/Rbuild3978ad7a9830a4/MetaboAnnotatoR/vignettes. See the Note section in ?knitr::knit

Quitting from MetaboAnnotatoR.Rmd:75-77 [load_data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `gzfile()`:
! cannot open the connection
---
Backtrace:
    ▆
 1. └─MetaboAnnotatoR::getDemoData(AIFdata = TRUE)
 2.   └─base::readRDS(rcpath)
 3.     └─base::gzfile(file, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MetaboAnnotatoR.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘MetaboAnnotatoR.Rmd’

--- re-building ‘gen_library_entry.Rmd’ using rmarkdown
Warning in in_dir(input_dir(), expr) :
  You changed the working directory to /tmp/RtmpmhT2G2 (probably via setwd()). It will be restored to /tmp/RtmpWfmc93/Rbuild3978ad7a9830a4/MetaboAnnotatoR/vignettes. See the Note section in ?knitr::knit
--- finished re-building ‘gen_library_entry.Rmd’

--- re-building ‘import_from_msp.Rmd’ using rmarkdown
Warning in in_dir(input_dir(), expr) :
  You changed the working directory to /tmp/RtmpmhT2G2 (probably via setwd()). It will be restored to /tmp/RtmpWfmc93/Rbuild3978ad7a9830a4/MetaboAnnotatoR/vignettes. See the Note section in ?knitr::knit
--- finished re-building ‘import_from_msp.Rmd’

SUMMARY: processing the following file failed:
  ‘MetaboAnnotatoR.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output

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