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URL: https://git.bioconductor.org/packages/PloidyPeaks

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

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Package: PloidyPeaks

Version: 0.99.14

RVersion: 4.6

BiocVersion: 3.23

BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PloidyPeaks

BuildTime: 0 minutes 31.33 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: PloidyPeaks_20260228202040

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: PloidyPeaks. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘PloidyPeaks/DESCRIPTION’ ... OK
* preparing ‘PloidyPeaks’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘ploidyPeaks.Rmd’ using rmarkdown

Quitting from ploidyPeaks.Rmd:396-408 [unnamed-chunk-23]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `method(update_ggplot, list(class_any, ggplot2::ggplot))`:
! Can't add `ggcyto::as.ggplot(gatedDataPlot)` to a <ggplot> object.
---
Backtrace:
     ▆
  1. └─PloidyPeaks::rectGateFlowFrame(...)
  2.   └─S7:::Ops.S7_object(ggcyto::as.ggplot(rawDataPlot), ggcyto::as.ggplot(gatedDataPlot))
  3.     ├─base::tryCatch(return(base_ops[[.Generic]](e1, e2)), S7_error_method_not_found = function(cnd) cnd)
  4.     │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  5.     │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  6.     │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
  7.     └─base_ops[[.Generic]](e1, e2)
  8.       ├─S7::S7_dispatch()
  9.       └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...)
 10.         └─ggplot2:::add_ggplot(e1, e2, e2name)
 11.           ├─ggplot2::ggplot_add(object, p, objectname)
 12.           └─ggplot2:::ggplot_add.default(object, p, objectname)
 13.             └─ggplot2::update_ggplot(object = object, plot = plot, ...)
 14.               ├─S7::S7_dispatch()
 15.               └─ggplot2 (local) `method(update_ggplot, list(class_any, ggplot2::ggplot))`(object = `<ggplt2::>`, plot = `<ggplt2::>`, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ploidyPeaks.Rmd' failed with diagnostics:
Can't add `ggcyto::as.ggplot(gatedDataPlot)` to a <ggplot> object.
--- failed re-building ‘ploidyPeaks.Rmd’

SUMMARY: processing the following file failed:
  ‘ploidyPeaks.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output

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