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URL: https://git.bioconductor.org/packages/GSABenchmark

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

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Package: GSABenchmark

Version: 0.99.2

RVersion: 4.6

BiocVersion: 3.23

BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GSABenchmark

BuildTime: 3 minutes 25.33 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: GSABenchmark_20260304042504

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: GSABenchmark. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘GSABenchmark/DESCRIPTION’ ... OK
* preparing ‘GSABenchmark’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘GSABenchmark.Rmd’ using rmarkdown

Quitting from GSABenchmark.Rmd:280-283 [unnamed-chunk-24]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `cmdscale()`:
! 'k' must be in {1, 2, ..  n - 1}
---
Backtrace:
    ▆
 1. └─GSABenchmark::mdsPlots(scObj, smr)
 2.   └─GSABenchmark:::plotList(...)
 3.     ├─base::do.call(calcFun, args)
 4.     └─GSABenchmark (local) `<fn>`(`<SnglCllE[,8569]>`, `<named list>`)
 5.       └─base::lapply(...)
 6.         └─GSABenchmark (local) FUN(X[[i]], ...)
 7.           ├─base::as.data.frame(cmdscale(distMat))
 8.           └─stats::cmdscale(distMat)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'GSABenchmark.Rmd' failed with diagnostics:
'k' must be in {1, 2, ..  n - 1}
--- failed re-building ‘GSABenchmark.Rmd’

SUMMARY: processing the following file failed:
  ‘GSABenchmark.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output

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