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URL: https://git.bioconductor.org/packages/spammR

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

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Package: spammR

Version: 0.99.18

RVersion: 4.6

BiocVersion: 3.23

BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data spammR

BuildTime: 2 minutes 34.20 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: spammR_20260310221529

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: spammR. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘spammR/DESCRIPTION’ ... OK
* preparing ‘spammR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘lipidProt.Rmd’ using rmarkdown

Quitting from lipidProt.Rmd:485-507 [leapR]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.enrichment_wrapper()`:
! unused argument (method = "ks")
---
Backtrace:
    ▆
 1. └─leapR::leapR(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'lipidProt.Rmd' failed with diagnostics:
unused argument (method = "ks")
--- failed re-building ‘lipidProt.Rmd’

--- re-building ‘spatMicrobiome.Rmd’ using rmarkdown
--- finished re-building ‘spatMicrobiome.Rmd’

--- re-building ‘spatProt.Rmd’ using rmarkdown

Quitting from spatProt.Rmd:400-417 [rank based enrichment]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'x' in selecting a method for function 'subset': unused argument (method = "ks")
---
Backtrace:
    ▆
 1. ├─spammR::enrich_gradient(...)
 2. │ ├─dplyr::arrange(...)
 3. │ ├─base::subset(...)
 4. │ └─leapR::leapR(...)
 5. └─base::.handleSimpleError(...)
 6.   └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'spatProt.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'subset': unused argument (method = "ks")
--- failed re-building ‘spatProt.Rmd’

SUMMARY: processing the following files failed:
  ‘lipidProt.Rmd’ ‘spatProt.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output

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