Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/imageFeatureTCGA

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

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Package: imageFeatureTCGA

Version: 0.99.64

RVersion: 4.6

BiocVersion: 3.23

BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data imageFeatureTCGA

BuildTime: 1 minutes 0.22 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: imageFeatureTCGA_20260319200507

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: imageFeatureTCGA. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘imageFeatureTCGA/DESCRIPTION’ ... OK
* preparing ‘imageFeatureTCGA’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘imageFeatureTCGA.Rmd’ using rmarkdown

Download status: 0 done; 1 in progress (0 b/s). Total size: 10.58 Kb (0%)...
Download status: 0 done; 1 in progress (982.68 Kb/s). Total size: 5.11 Mb (17%)...
Download status: 0 done; 1 in progress (1.12 Mb/s). Total size: 11.61 Mb (38%)...
Download status: 0 done; 1 in progress (1.17 Mb/s). Total size: 17.96 Mb (59%)...
Download status: 0 done; 1 in progress (1.20 Mb/s). Total size: 24.52 Mb (80%)...
Download status: 1 done; 0 in progress. Total size: 30.60 Mb (100%)... done!             

Quitting from imageFeatureTCGA.Rmd:116-118 [getcatalog]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `BiocFileCache::bfcadd()`:
! all(rtype == "web" | file.exists(fpath)) is not TRUE
---
Backtrace:
     ▆
  1. └─imageFeatureTCGA::getCatalog()
  2.   ├─readr::read_tsv(.download_catalog(redownload = redownload), col_types = .CATALOG_COL_TYPES)
  3.   │ └─readr:::standardise_literal_data(...)
  4.   └─imageFeatureTCGA:::.download_catalog(redownload = redownload)
  5.     └─imageFeatureTCGA:::.cache_url_files(...)
  6.       └─base::mapply(...)
  7.         └─imageFeatureTCGA (local) `<fn>`(...)
  8.           ├─BiocFileCache::bfcadd(...)
  9.           └─BiocFileCache::bfcadd(...)
 10.             └─base::stopifnot(all(rtype == "web" | file.exists(fpath)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'imageFeatureTCGA.Rmd' failed with diagnostics:
all(rtype == "web" | file.exists(fpath)) is not TRUE
--- failed re-building ‘imageFeatureTCGA.Rmd’

SUMMARY: processing the following file failed:
  ‘imageFeatureTCGA.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output

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