Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/HistoImagePlot

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

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Package: HistoImagePlot

Version: 0.99.8

RVersion: 4.6

BiocVersion: 3.23

BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HistoImagePlot

BuildTime: 1 minutes 9.82 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: HistoImagePlot_20260323120715

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: HistoImagePlot. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 3. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘HistoImagePlot/DESCRIPTION’ ... OK
* preparing ‘HistoImagePlot’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘HistoImagePlot.Rmd’ using rmarkdown

Download status: 0 done; 1 in progress (0 b/s). Total size: 1.33 Kb (0%)...
Download status: 1 done; 0 in progress. Total size: 10.96 Mb (100%)... done!             

Quitting from HistoImagePlot.Rmd:74-81 [overlay-basic]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `png::readPNG()`:
! libpng error: Read Error
---
Backtrace:
    ▆
 1. └─HistoImagePlot::plotHoverNetH5ADOverlay(hn_spe, thumb_path)
 2.   ├─magick::image_read(import(HoverNet(thumbnail_path)))
 3.   ├─BiocIO::import(HoverNet(thumbnail_path))
 4.   └─imageFeatureTCGA::import(HoverNet(thumbnail_path))
 5.     └─png::readPNG(png_path)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'HistoImagePlot.Rmd' failed with diagnostics:
libpng error: Read Error
--- failed re-building ‘HistoImagePlot.Rmd’

SUMMARY: processing the following file failed:
  ‘HistoImagePlot.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output

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