Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/OMA

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)/x86_64	OK	WARNINGS	skipped	OK

nebbiolo1 Summary

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Package: OMA

Version: 0.99.5

RVersion: 4.6

BiocVersion: 3.23

BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data OMA

BuildTime: 24 minutes 0.92 seconds

CheckCommand: BiocCheckGitClone('OMA') && /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --no-vignettes --timings --library=/home/pkgbuild/packagebuilder/workers/jobs/4185/R-libs --install=check:/home/pkgbuild/packagebuilder/workers/jobs/4185/7c22653c61f6e158a318dc9289870954427826e2/OMA.install-out.txt OMA_0.99.5.tar.gz && BiocCheck('OMA_0.99.5.tar.gz', `new-package`=TRUE)

CheckTime: 0 minutes 41.16 seconds

BuildBinCommand:

BuildBinTime:

PackageFileSize: 418274.27 KiB

BuildID:: OMA_20260326064323

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: OMA. Starting Build package. Starting Check package.

PostProcessing: Finished Git clone. Package type: Book. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 0. Adding Build Product Information to Database.Checking Package status: 0.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘OMA/DESCRIPTION’ ... OK
* preparing ‘OMA’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
Omitted ‘LazyData’ from DESCRIPTION
* building ‘OMA_0.99.5.tar.gz’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/doc/book/pages/community_similarity_files/figure-html/MDS_plot_based_on_the_Bray-Curtis_distances-1.png’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/doc/book/pages/community_similarity_files/figure-html/MDS_plot_based_on_the_Bray-Curtis_distances_using_rarefaction-1.png’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/doc/book/site_libs/quarto-html/quarto-syntax-highlighting-a14e345711173c227b21482e2eb4cc70.css’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/doc/book/site_libs/quarto-html/quarto-syntax-highlighting-dark-6d7e0e055978adcb0dc3bbe98a6d8351.css’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/alpha_diversity_cache/html/plot_all_diversities_f367742d3e836842d43fc645f550dda2.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/clustering_cache/html/taxa_clustering_histrogram_6bbbf81548c90f4707885e58828594cd.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/clustering_cache/html/taxa_clustering_row_merge_c5526aeacdbc2557743e98adde8a92c5.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/Aitchison_distance_without_rarefaction_55dca6d39da9e1a825efc0eb4f4fbefe.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/Aitchison_distance_without_rarefaction_55dca6d39da9e1a825efc0eb4f4fbefe.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/Aitchison_distance_without_rarefaction_55dca6d39da9e1a825efc0eb4f4fbefe.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/MDS_plot_based_on_the_Bray-Curtis_distances_da7f62259c236e60a11a957d4af2a6da.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/MDS_plot_based_on_the_Bray-Curtis_distances_da7f62259c236e60a11a957d4af2a6da.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/MDS_plot_based_on_the_Bray-Curtis_distances_da7f62259c236e60a11a957d4af2a6da.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/MDS_plot_based_on_the_Bray-Curtis_distances_using_rarefaction_5b9750c9d5bd6045789579cbecd00a87.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/MDS_plot_based_on_the_Bray-Curtis_distances_using_rarefaction_5b9750c9d5bd6045789579cbecd00a87.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/MDS_plot_based_on_the_Bray-Curtis_distances_using_rarefaction_5b9750c9d5bd6045789579cbecd00a87.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/diss_matrix_plot_59557c0374fc1c9b56b4743ad666f98d.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/import_rda_dataset_dfdc384e20a691c4cb68c7ca52782102.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/import_rda_dataset_dfdc384e20a691c4cb68c7ca52782102.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/import_rda_dataset_dfdc384e20a691c4cb68c7ca52782102.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/mds-nmds_comparison1_2bf8568925ac406810071926df3f7c4c.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/mds-nmds_comparison1_2bf8568925ac406810071926df3f7c4c.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/mds-nmds_comparison1_2bf8568925ac406810071926df3f7c4c.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/mds-nmds_comparison2_f4a4a8fbf38233af8ab05769e5a9fba5.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/mds-nmds_comparison2_f4a4a8fbf38233af8ab05769e5a9fba5.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/mds-nmds_comparison2_f4a4a8fbf38233af8ab05769e5a9fba5.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/plot_top_coef_anova_e61dda665071b04f9f2a0f5e000a30c6.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/plot_top_coef_anova_e61dda665071b04f9f2a0f5e000a30c6.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/plot_top_coef_anova_e61dda665071b04f9f2a0f5e000a30c6.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/rda_homogeneity_results_579a25c1f7a989aa97fbcf1792f37d72.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/rda_homogeneity_results_579a25c1f7a989aa97fbcf1792f37d72.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/rda_homogeneity_results_579a25c1f7a989aa97fbcf1792f37d72.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/rda_permanova_results_b5792c4036cb5443ed229b74d7667e3b.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/rda_permanova_results_b5792c4036cb5443ed229b74d7667e3b.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_cache/html/rda_permanova_results_b5792c4036cb5443ed229b74d7667e3b.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_files/figure-html/MDS_plot_based_on_the_Bray-Curtis_distances-1.png’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/community_similarity_files/figure-html/MDS_plot_based_on_the_Bray-Curtis_distances_using_rarefaction-1.png’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/cross_correlation_cache/html/cross-association1_42684505b5f73ad97c6a94d8fc450dd1.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/cross_correlation_cache/html/cross-association2_25b644c011baf1af9c37e79e5f42b08f.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/cross_correlation_cache/html/cross-association3_294fa4d3e10453155ddb8726519d9a96.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/cross_correlation_cache/html/cross-association4_ca569f89dde51699342bdfbb8d9d5ddb.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/cross_correlation_cache/html/cross-association5_810ddbf677be8d98f084918588e51e0f.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/cross_correlation_cache/html/cross-association6_62d2fdcf829b60d02d8780277e5c7a07.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/cross_correlation_cache/html/cross-association7_e3b591fea66f17b9e94f60d21c52ef83.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/disable_chunks_53076410686a7aea7887b8ece5f84f1e.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/enable_chunks_30a35f42b910c4ec6d69d56c7bfbeb6a.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/load_packages_and_data_bd44d54a092c78b70062dd3eb0e32f19.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/load_packages_and_data_bd44d54a092c78b70062dd3eb0e32f19.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/load_packages_and_data_bd44d54a092c78b70062dd3eb0e32f19.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/plot_daa_est_ci_7ae30d189b90246a679bcc3f565eef13.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/plot_daa_est_ci_7ae30d189b90246a679bcc3f565eef13.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/plot_daa_est_ci_7ae30d189b90246a679bcc3f565eef13.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/print_daa_cov_1_97ef7486a91e9d1b830b2182289d52b8.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/print_daa_cov_1_97ef7486a91e9d1b830b2182289d52b8.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/print_daa_cov_1_97ef7486a91e9d1b830b2182289d52b8.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/print_daa_cov_2_da072b0c24102d2ff5bd54c2aff9900c.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/print_daa_cov_2_da072b0c24102d2ff5bd54c2aff9900c.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/print_daa_cov_2_da072b0c24102d2ff5bd54c2aff9900c.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/print_daa_ia_2_95cf6604665cb9e553d61c85cfb1087b.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/results_DPA_cov_bc0ae119a6dc957a1a4df30b185fab13.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/results_DPA_cov_bc0ae119a6dc957a1a4df30b185fab13.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/results_DPA_cov_bc0ae119a6dc957a1a4df30b185fab13.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/results_daa_basic_45241c785c9651c4239d96555f9f92ab.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/results_daa_basic_45241c785c9651c4239d96555f9f92ab.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/results_daa_basic_45241c785c9651c4239d96555f9f92ab.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/differential_abundance_cache/html/run_daa_basic_3f5bcc8957808d7ce5ad7b69e181ef5c.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/3 - general preprocessing_b1fc975144b22605ea892952b7fe66f3.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/3 - general preprocessing_b1fc975144b22605ea892952b7fe66f3.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/3 - general preprocessing_b1fc975144b22605ea892952b7fe66f3.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/3.1 - preprocessing for classification_78dd72349054cf11ec9177507a14b2ff.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/3.1 - preprocessing for classification_78dd72349054cf11ec9177507a14b2ff.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/3.1 - preprocessing for classification_78dd72349054cf11ec9177507a14b2ff.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/3.2 - preprocessing for regression_fa2ac43bde93069af042b40250253d42.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/3.2 - preprocessing for regression_fa2ac43bde93069af042b40250253d42.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/3.2 - preprocessing for regression_fa2ac43bde93069af042b40250253d42.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/4.1 - RF for classification_eb49615fda7344e3b5e07b0ce4eef103.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/4.1 - RF for classification_eb49615fda7344e3b5e07b0ce4eef103.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/4.1 - RF for classification_eb49615fda7344e3b5e07b0ce4eef103.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/4.2 - RF for regression_526dc679228a3bb5db05cf2175f6e407.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/4.2 - RF for regression_526dc679228a3bb5db05cf2175f6e407.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/4.2 - RF for regression_526dc679228a3bb5db05cf2175f6e407.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/5.1 - RF classification performance_dc5fb2fb1e668633fba0992d9970ee3d.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/5.1 - RF classification performance_dc5fb2fb1e668633fba0992d9970ee3d.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/5.1 - RF classification performance_dc5fb2fb1e668633fba0992d9970ee3d.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/5.2 - XGBoost classification performance_6b9a1a88ef158ba2cb67037bcdebfd09.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/5.2 - XGBoost classification performance_6b9a1a88ef158ba2cb67037bcdebfd09.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/5.2 - XGBoost classification performance_6b9a1a88ef158ba2cb67037bcdebfd09.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/5.3 - RF regression performance_ec1e69e797f334a2698f886aa107ac47.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/5.3 - RF regression performance_ec1e69e797f334a2698f886aa107ac47.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/5.3 - RF regression performance_ec1e69e797f334a2698f886aa107ac47.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/6.1 - calculate metrics for ROC and PRC_a5c573896a093369e1a37ea4b3a6b67d.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/6.1 - calculate metrics for ROC and PRC_a5c573896a093369e1a37ea4b3a6b67d.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/6.1 - calculate metrics for ROC and PRC_a5c573896a093369e1a37ea4b3a6b67d.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/6.2 - plot ROC and PRC_229e2bc014389c0fa44a11798caf8df4.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/6.2 - plot ROC and PRC_229e2bc014389c0fa44a11798caf8df4.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/6.2 - plot ROC and PRC_229e2bc014389c0fa44a11798caf8df4.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/6.2 - plot predicted vs observed_9348c34bc5f07159f621db50f179b6d5.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/6.2 - plot predicted vs observed_9348c34bc5f07159f621db50f179b6d5.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/6.2 - plot predicted vs observed_9348c34bc5f07159f621db50f179b6d5.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/7 - Interpret the model_d565034c00b8df123cc68ddeae9b4206.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/7 - Interpret the model_d565034c00b8df123cc68ddeae9b4206.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/machine_learning_cache/html/7 - Interpret the model_d565034c00b8df123cc68ddeae9b4206.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/quality_control_cache/html/contaminant_prevalence_9460b9df53762f8eb3ace93b8018b7dd.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/quality_control_cache/html/contaminant_prevalence_9460b9df53762f8eb3ace93b8018b7dd.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/quality_control_cache/html/contaminant_prevalence_9460b9df53762f8eb3ace93b8018b7dd.rdx’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/quality_control_cache/html/replace_missing_values_a449fdd2883aca231f5c81d51452fd66.RData’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/quality_control_cache/html/replace_missing_values_a449fdd2883aca231f5c81d51452fd66.rdb’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘OMA/inst/pages/quality_control_cache/html/replace_missing_values_a449fdd2883aca231f5c81d51452fd66.rdx’

nebbiolo1 CHECK output

[top]

===============================

 BiocCheckGitClone('OMA')

===============================

→ sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/4185/7c22653c61f6e158a318dc9289870954427826e2/OMA
→ BiocVersion: 3.23
→ Package: OMA
→ PackageVersion: 0.99.5
→ BiocCheckDir: /home/pkgbuild/packagebuilder/workers/jobs/4185/7c22653c61f6e158a318dc9289870954427826e2/OMA.BiocCheck
→ BiocCheckVersion: 1.47.20
→ sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/4185/7c22653c61f6e158a318dc9289870954427826e2/OMA
→ installDir: NULL
→ isTarBall: FALSE
→ platform: unix
* Checking valid files...
* Checking individual file sizes...
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking if DESCRIPTION is well formatted...
* Checking NAMESPACE...
* Checking for valid maintainer...
* Checking CITATION...
i NOTE: (Optional) CITATION file not found. Only include a CITATION file if
there is a preprint or publication for this Bioconductor package. Note that
Bioconductor packages are not required to have a CITATION file but it is useful
both for users and for tracking Bioconductor project-wide metrics. When
including a CITATION file, add the publication using the 'doi' argument of
'bibentry()'.
── BiocCheck v1.47.20 results ──────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 0 WARNINGS | i 1 NOTES
i For more details, run
  browseVignettes(package = 'BiocCheck')




===============================

 R CMD CHECK

===============================

* using log directory ‘/home/pkgbuild/packagebuilder/workers/jobs/4185/7c22653c61f6e158a318dc9289870954427826e2/OMA.Rcheck’
* using R Under development (unstable) (2026-03-05 r89546)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-03-26 07:08:07 UTC
* using option ‘--no-vignettes’
* checking for file ‘OMA/DESCRIPTION’ ... OK
* this is package ‘OMA’ version ‘0.99.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... WARNING
Found the following files with non-portable file names:
  inst/doc/book/pages/machine_learning_files/figure-html/6.2 - plot ROC and PRC-1.png
  inst/doc/book/pages/machine_learning_files/figure-html/6.2 - plot predicted vs observed-1.png
  inst/doc/book/pages/machine_learning_files/figure-html/7 - Interpret the model-1.png
  inst/pages/machine_learning_cache/html/2 - Setup_73ac39bf821fe345888ab5d4d2c8a5ee.RData
  inst/pages/machine_learning_cache/html/2 - Setup_73ac39bf821fe345888ab5d4d2c8a5ee.rdb
  inst/pages/machine_learning_cache/html/2 - Setup_73ac39bf821fe345888ab5d4d2c8a5ee.rdx
  inst/pages/machine_learning_cache/html/3 - general preprocessing_b1fc975144b22605ea892952b7fe66f3.RData
  inst/pages/machine_learning_cache/html/3 - general preprocessing_b1fc975144b22605ea892952b7fe66f3.rdb
  inst/pages/machine_learning_cache/html/3 - general preprocessing_b1fc975144b22605ea892952b7fe66f3.rdx
  inst/pages/machine_learning_cache/html/3.1 - preprocessing for classification_78dd72349054cf11ec9177507a14b2ff.RData
  inst/pages/machine_learning_cache/html/3.1 - preprocessing for classification_78dd72349054cf11ec9177507a14b2ff.rdb
  inst/pages/machine_learning_cache/html/3.1 - preprocessing for classification_78dd72349054cf11ec9177507a14b2ff.rdx
  inst/pages/machine_learning_cache/html/3.2 - preprocessing for regression_fa2ac43bde93069af042b40250253d42.RData
  inst/pages/machine_learning_cache/html/3.2 - preprocessing for regression_fa2ac43bde93069af042b40250253d42.rdb
  inst/pages/machine_learning_cache/html/3.2 - preprocessing for regression_fa2ac43bde93069af042b40250253d42.rdx
  inst/pages/machine_learning_cache/html/4.1 - RF for classification_eb49615fda7344e3b5e07b0ce4eef103.RData
  inst/pages/machine_learning_cache/html/4.1 - RF for classification_eb49615fda7344e3b5e07b0ce4eef103.rdb
  inst/pages/machine_learning_cache/html/4.1 - RF for classification_eb49615fda7344e3b5e07b0ce4eef103.rdx
  inst/pages/machine_learning_cache/html/4.2 - RF for regression_526dc679228a3bb5db05cf2175f6e407.RData
  inst/pages/machine_learning_cache/html/4.2 - RF for regression_526dc679228a3bb5db05cf2175f6e407.rdb
  inst/pages/machine_learning_cache/html/4.2 - RF for regression_526dc679228a3bb5db05cf2175f6e407.rdx
  inst/pages/machine_learning_cache/html/4.3 - XGBoost_3192b971e77a89834740b6aa66bdce5a.RData
  inst/pages/machine_learning_cache/html/4.3 - XGBoost_3192b971e77a89834740b6aa66bdce5a.rdb
  inst/pages/machine_learning_cache/html/4.3 - XGBoost_3192b971e77a89834740b6aa66bdce5a.rdx
  inst/pages/machine_learning_cache/html/5.1 - RF classification performance_dc5fb2fb1e668633fba0992d9970ee3d.RData
  inst/pages/machine_learning_cache/html/5.1 - RF classification performance_dc5fb2fb1e668633fba0992d9970ee3d.rdb
  inst/pages/machine_learning_cache/html/5.1 - RF classification performance_dc5fb2fb1e668633fba0992d9970ee3d.rdx
  inst/pages/machine_learning_cache/html/5.2 - XGBoost classification performance_6b9a1a88ef158ba2cb67037bcdebfd09.RData
  inst/pages/machine_learning_cache/html/5.2 - XGBoost classification performance_6b9a1a88ef158ba2cb67037bcdebfd09.rdb
  inst/pages/machine_learning_cache/html/5.2 - XGBoost classification performance_6b9a1a88ef158ba2cb67037bcdebfd09.rdx
  inst/pages/machine_learning_cache/html/5.3 - RF regression performance_ec1e69e797f334a2698f886aa107ac47.RData
  inst/pages/machine_learning_cache/html/5.3 - RF regression performance_ec1e69e797f334a2698f886aa107ac47.rdb
  inst/pages/machine_learning_cache/html/5.3 - RF regression performance_ec1e69e797f334a2698f886aa107ac47.rdx
  inst/pages/machine_learning_cache/html/6.1 - calculate metrics for ROC and PRC_a5c573896a093369e1a37ea4b3a6b67d.RData
  inst/pages/machine_learning_cache/html/6.1 - calculate metrics for ROC and PRC_a5c573896a093369e1a37ea4b3a6b67d.rdb
  inst/pages/machine_learning_cache/html/6.1 - calculate metrics for ROC and PRC_a5c573896a093369e1a37ea4b3a6b67d.rdx
  inst/pages/machine_learning_cache/html/6.2 - plot ROC and PRC_229e2bc014389c0fa44a11798caf8df4.RData
  inst/pages/machine_learning_cache/html/6.2 - plot ROC and PRC_229e2bc014389c0fa44a11798caf8df4.rdb
  inst/pages/machine_learning_cache/html/6.2 - plot ROC and PRC_229e2bc014389c0fa44a11798caf8df4.rdx
  inst/pages/machine_learning_cache/html/6.2 - plot predicted vs observed_9348c34bc5f07159f621db50f179b6d5.RData
  inst/pages/machine_learning_cache/html/6.2 - plot predicted vs observed_9348c34bc5f07159f621db50f179b6d5.rdb
  inst/pages/machine_learning_cache/html/6.2 - plot predicted vs observed_9348c34bc5f07159f621db50f179b6d5.rdx
  inst/pages/machine_learning_cache/html/7 - Interpret the model_d565034c00b8df123cc68ddeae9b4206.RData
  inst/pages/machine_learning_cache/html/7 - Interpret the model_d565034c00b8df123cc68ddeae9b4206.rdb
  inst/pages/machine_learning_cache/html/7 - Interpret the model_d565034c00b8df123cc68ddeae9b4206.rdx
  inst/pages/machine_learning_files/figure-html/6.2 - plot ROC and PRC-1.png
  inst/pages/machine_learning_files/figure-html/6.2 - plot predicted vs observed-1.png
  inst/pages/machine_learning_files/figure-html/7 - Interpret the model-1.png
These are not fully portable file names.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
Found the following non-portable file paths:
  OMA/inst/doc/book/pages/community_similarity_files/figure-html/MDS_plot_based_on_the_Bray-Curtis_distances-1.png
  OMA/inst/doc/book/pages/community_similarity_files/figure-html/MDS_plot_based_on_the_Bray-Curtis_distances_using_rarefaction-1.png
  OMA/inst/doc/book/site_libs/quarto-html/quarto-syntax-highlighting-a14e345711173c227b21482e2eb4cc70.css
  OMA/inst/doc/book/site_libs/quarto-html/quarto-syntax-highlighting-dark-6d7e0e055978adcb0dc3bbe98a6d8351.css
  OMA/inst/pages/alpha_diversity_cache/html/plot_all_diversities_f367742d3e836842d43fc645f550dda2.RData
  OMA/inst/pages/clustering_cache/html/taxa_clustering_histrogram_6bbbf81548c90f4707885e58828594cd.RData
  OMA/inst/pages/clustering_cache/html/taxa_clustering_row_merge_c5526aeacdbc2557743e98adde8a92c5.RData
  OMA/inst/pages/community_similarity_cache/html/Aitchison_distance_without_rarefaction_55dca6d39da9e1a825efc0eb4f4fbefe.RData
  OMA/inst/pages/community_similarity_cache/html/Aitchison_distance_without_rarefaction_55dca6d39da9e1a825efc0eb4f4fbefe.rdb
  OMA/inst/pages/community_similarity_cache/html/Aitchison_distance_without_rarefaction_55dca6d39da9e1a825efc0eb4f4fbefe.rdx
  OMA/inst/pages/community_similarity_cache/html/MDS_plot_based_on_the_Bray-Curtis_distances_da7f62259c236e60a11a957d4af2a6da.RData
  OMA/inst/pages/community_similarity_cache/html/MDS_plot_based_on_the_Bray-Curtis_distances_da7f62259c236e60a11a957d4af2a6da.rdb
  OMA/inst/pages/community_similarity_cache/html/MDS_plot_based_on_the_Bray-Curtis_distances_da7f62259c236e60a11a957d4af2a6da.rdx
  OMA/inst/pages/community_similarity_cache/html/MDS_plot_based_on_the_Bray-Curtis_distances_using_rarefaction_5b9750c9d5bd6045789579cbecd00a87.RData
  OMA/inst/pages/community_similarity_cache/html/MDS_plot_based_on_the_Bray-Curtis_distances_using_rarefaction_5b9750c9d5bd6045789579cbecd00a87.rdb
  OMA/inst/pages/community_similarity_cache/html/MDS_plot_based_on_the_Bray-Curtis_distances_using_rarefaction_5b9750c9d5bd6045789579cbecd00a87.rdx
  OMA/inst/pages/community_similarity_cache/html/diss_matrix_plot_59557c0374fc1c9b56b4743ad666f98d.RData
  OMA/inst/pages/community_similarity_cache/html/import_rda_dataset_dfdc384e20a691c4cb68c7ca52782102.RData
  OMA/inst/pages/community_similarity_cache/html/import_rda_dataset_dfdc384e20a691c4cb68c7ca52782102.rdb
  OMA/inst/pages/community_similarity_cache/html/import_rda_dataset_dfdc384e20a691c4cb68c7ca52782102.rdx
  OMA/inst/pages/community_similarity_cache/html/mds-nmds_comparison1_2bf8568925ac406810071926df3f7c4c.RData
  OMA/inst/pages/community_similarity_cache/html/mds-nmds_comparison1_2bf8568925ac406810071926df3f7c4c.rdb
  OMA/inst/pages/community_similarity_cache/html/mds-nmds_comparison1_2bf8568925ac406810071926df3f7c4c.rdx
  OMA/inst/pages/community_similarity_cache/html/mds-nmds_comparison2_f4a4a8fbf38233af8ab05769e5a9fba5.RData
  OMA/inst/pages/community_similarity_cache/html/mds-nmds_comparison2_f4a4a8fbf38233af8ab05769e5a9fba5.rdb
  OMA/inst/pages/community_similarity_cache/html/mds-nmds_comparison2_f4a4a8fbf38233af8ab05769e5a9fba5.rdx
  OMA/inst/pages/community_similarity_cache/html/plot_top_coef_anova_e61dda665071b04f9f2a0f5e000a30c6.RData
  OMA/inst/pages/community_similarity_cache/html/plot_top_coef_anova_e61dda665071b04f9f2a0f5e000a30c6.rdb
  OMA/inst/pages/community_similarity_cache/html/plot_top_coef_anova_e61dda665071b04f9f2a0f5e000a30c6.rdx
  OMA/inst/pages/community_similarity_cache/html/rda_homogeneity_results_579a25c1f7a989aa97fbcf1792f37d72.RData
  OMA/inst/pages/community_similarity_cache/html/rda_homogeneity_results_579a25c1f7a989aa97fbcf1792f37d72.rdb
  OMA/inst/pages/community_similarity_cache/html/rda_homogeneity_results_579a25c1f7a989aa97fbcf1792f37d72.rdx
  OMA/inst/pages/community_similarity_cache/html/rda_permanova_results_b5792c4036cb5443ed229b74d7667e3b.RData
  OMA/inst/pages/community_similarity_cache/html/rda_permanova_results_b5792c4036cb5443ed229b74d7667e3b.rdb
  OMA/inst/pages/community_similarity_cache/html/rda_permanova_results_b5792c4036cb5443ed229b74d7667e3b.rdx
  OMA/inst/pages/community_similarity_files/figure-html/MDS_plot_based_on_the_Bray-Curtis_distances-1.png
  OMA/inst/pages/community_similarity_files/figure-html/MDS_plot_based_on_the_Bray-Curtis_distances_using_rarefaction-1.png
  OMA/inst/pages/cross_correlation_cache/html/cross-association1_42684505b5f73ad97c6a94d8fc450dd1.RData
  OMA/inst/pages/cross_correlation_cache/html/cross-association2_25b644c011baf1af9c37e79e5f42b08f.RData
  OMA/inst/pages/cross_correlation_cache/html/cross-association3_294fa4d3e10453155ddb8726519d9a96.RData
  OMA/inst/pages/cross_correlation_cache/html/cross-association4_ca569f89dde51699342bdfbb8d9d5ddb.RData
  OMA/inst/pages/cross_correlation_cache/html/cross-association5_810ddbf677be8d98f084918588e51e0f.RData
  OMA/inst/pages/cross_correlation_cache/html/cross-association6_62d2fdcf829b60d02d8780277e5c7a07.RData
  OMA/inst/pages/cross_correlation_cache/html/cross-association7_e3b591fea66f17b9e94f60d21c52ef83.RData
  OMA/inst/pages/differential_abundance_cache/html/disable_chunks_53076410686a7aea7887b8ece5f84f1e.RData
  OMA/inst/pages/differential_abundance_cache/html/enable_chunks_30a35f42b910c4ec6d69d56c7bfbeb6a.RData
  OMA/inst/pages/differential_abundance_cache/html/load_packages_and_data_bd44d54a092c78b70062dd3eb0e32f19.RData
  OMA/inst/pages/differential_abundance_cache/html/load_packages_and_data_bd44d54a092c78b70062dd3eb0e32f19.rdb
  OMA/inst/pages/differential_abundance_cache/html/load_packages_and_data_bd44d54a092c78b70062dd3eb0e32f19.rdx
  OMA/inst/pages/differential_abundance_cache/html/plot_daa_est_ci_7ae30d189b90246a679bcc3f565eef13.RData
  OMA/inst/pages/differential_abundance_cache/html/plot_daa_est_ci_7ae30d189b90246a679bcc3f565eef13.rdb
  OMA/inst/pages/differential_abundance_cache/html/plot_daa_est_ci_7ae30d189b90246a679bcc3f565eef13.rdx
  OMA/inst/pages/differential_abundance_cache/html/print_daa_cov_1_97ef7486a91e9d1b830b2182289d52b8.RData
  OMA/inst/pages/differential_abundance_cache/html/print_daa_cov_1_97ef7486a91e9d1b830b2182289d52b8.rdb
  OMA/inst/pages/differential_abundance_cache/html/print_daa_cov_1_97ef7486a91e9d1b830b2182289d52b8.rdx
  OMA/inst/pages/differential_abundance_cache/html/print_daa_cov_2_da072b0c24102d2ff5bd54c2aff9900c.RData
  OMA/inst/pages/differential_abundance_cache/html/print_daa_cov_2_da072b0c24102d2ff5bd54c2aff9900c.rdb
  OMA/inst/pages/differential_abundance_cache/html/print_daa_cov_2_da072b0c24102d2ff5bd54c2aff9900c.rdx
  OMA/inst/pages/differential_abundance_cache/html/print_daa_ia_2_95cf6604665cb9e553d61c85cfb1087b.RData
  OMA/inst/pages/differential_abundance_cache/html/results_DPA_cov_bc0ae119a6dc957a1a4df30b185fab13.RData
  OMA/inst/pages/differential_abundance_cache/html/results_DPA_cov_bc0ae119a6dc957a1a4df30b185fab13.rdb
  OMA/inst/pages/differential_abundance_cache/html/results_DPA_cov_bc0ae119a6dc957a1a4df30b185fab13.rdx
  OMA/inst/pages/differential_abundance_cache/html/results_daa_basic_45241c785c9651c4239d96555f9f92ab.RData
  OMA/inst/pages/differential_abundance_cache/html/results_daa_basic_45241c785c9651c4239d96555f9f92ab.rdb
  OMA/inst/pages/differential_abundance_cache/html/results_daa_basic_45241c785c9651c4239d96555f9f92ab.rdx
  OMA/inst/pages/differential_abundance_cache/html/run_daa_basic_3f5bcc8957808d7ce5ad7b69e181ef5c.RData
  OMA/inst/pages/machine_learning_cache/html/3 - general preprocessing_b1fc975144b22605ea892952b7fe66f3.RData
  OMA/inst/pages/machine_learning_cache/html/3 - general preprocessing_b1fc975144b22605ea892952b7fe66f3.rdb
  OMA/inst/pages/machine_learning_cache/html/3 - general preprocessing_b1fc975144b22605ea892952b7fe66f3.rdx
  OMA/inst/pages/machine_learning_cache/html/3.1 - preprocessing for classification_78dd72349054cf11ec9177507a14b2ff.RData
  OMA/inst/pages/machine_learning_cache/html/3.1 - preprocessing for classification_78dd72349054cf11ec9177507a14b2ff.rdb
  OMA/inst/pages/machine_learning_cache/html/3.1 - preprocessing for classification_78dd72349054cf11ec9177507a14b2ff.rdx
  OMA/inst/pages/machine_learning_cache/html/3.2 - preprocessing for regression_fa2ac43bde93069af042b40250253d42.RData
  OMA/inst/pages/machine_learning_cache/html/3.2 - preprocessing for regression_fa2ac43bde93069af042b40250253d42.rdb
  OMA/inst/pages/machine_learning_cache/html/3.2 - preprocessing for regression_fa2ac43bde93069af042b40250253d42.rdx
  OMA/inst/pages/machine_learning_cache/html/4.1 - RF for classification_eb49615fda7344e3b5e07b0ce4eef103.RData
  OMA/inst/pages/machine_learning_cache/html/4.1 - RF for classification_eb49615fda7344e3b5e07b0ce4eef103.rdb
  OMA/inst/pages/machine_learning_cache/html/4.1 - RF for classification_eb49615fda7344e3b5e07b0ce4eef103.rdx
  OMA/inst/pages/machine_learning_cache/html/4.2 - RF for regression_526dc679228a3bb5db05cf2175f6e407.RData
  OMA/inst/pages/machine_learning_cache/html/4.2 - RF for regression_526dc679228a3bb5db05cf2175f6e407.rdb
  OMA/inst/pages/machine_learning_cache/html/4.2 - RF for regression_526dc679228a3bb5db05cf2175f6e407.rdx
  OMA/inst/pages/machine_learning_cache/html/5.1 - RF classification performance_dc5fb2fb1e668633fba0992d9970ee3d.RData
  OMA/inst/pages/machine_learning_cache/html/5.1 - RF classification performance_dc5fb2fb1e668633fba0992d9970ee3d.rdb
  OMA/inst/pages/machine_learning_cache/html/5.1 - RF classification performance_dc5fb2fb1e668633fba0992d9970ee3d.rdx
  OMA/inst/pages/machine_learning_cache/html/5.2 - XGBoost classification performance_6b9a1a88ef158ba2cb67037bcdebfd09.RData
  OMA/inst/pages/machine_learning_cache/html/5.2 - XGBoost classification performance_6b9a1a88ef158ba2cb67037bcdebfd09.rdb
  OMA/inst/pages/machine_learning_cache/html/5.2 - XGBoost classification performance_6b9a1a88ef158ba2cb67037bcdebfd09.rdx
  OMA/inst/pages/machine_learning_cache/html/5.3 - RF regression performance_ec1e69e797f334a2698f886aa107ac47.RData
  OMA/inst/pages/machine_learning_cache/html/5.3 - RF regression performance_ec1e69e797f334a2698f886aa107ac47.rdb
  OMA/inst/pages/machine_learning_cache/html/5.3 - RF regression performance_ec1e69e797f334a2698f886aa107ac47.rdx
  OMA/inst/pages/machine_learning_cache/html/6.1 - calculate metrics for ROC and PRC_a5c573896a093369e1a37ea4b3a6b67d.RData
  OMA/inst/pages/machine_learning_cache/html/6.1 - calculate metrics for ROC and PRC_a5c573896a093369e1a37ea4b3a6b67d.rdb
  OMA/inst/pages/machine_learning_cache/html/6.1 - calculate metrics for ROC and PRC_a5c573896a093369e1a37ea4b3a6b67d.rdx
  OMA/inst/pages/machine_learning_cache/html/6.2 - plot ROC and PRC_229e2bc014389c0fa44a11798caf8df4.RData
  OMA/inst/pages/machine_learning_cache/html/6.2 - plot ROC and PRC_229e2bc014389c0fa44a11798caf8df4.rdb
  OMA/inst/pages/machine_learning_cache/html/6.2 - plot ROC and PRC_229e2bc014389c0fa44a11798caf8df4.rdx
  OMA/inst/pages/machine_learning_cache/html/6.2 - plot predicted vs observed_9348c34bc5f07159f621db50f179b6d5.RData
  OMA/inst/pages/machine_learning_cache/html/6.2 - plot predicted vs observed_9348c34bc5f07159f621db50f179b6d5.rdb
  OMA/inst/pages/machine_learning_cache/html/6.2 - plot predicted vs observed_9348c34bc5f07159f621db50f179b6d5.rdx
  OMA/inst/pages/machine_learning_cache/html/7 - Interpret the model_d565034c00b8df123cc68ddeae9b4206.RData
  OMA/inst/pages/machine_learning_cache/html/7 - Interpret the model_d565034c00b8df123cc68ddeae9b4206.rdb
  OMA/inst/pages/machine_learning_cache/html/7 - Interpret the model_d565034c00b8df123cc68ddeae9b4206.rdx
  OMA/inst/pages/quality_control_cache/html/contaminant_prevalence_9460b9df53762f8eb3ace93b8018b7dd.RData
  OMA/inst/pages/quality_control_cache/html/contaminant_prevalence_9460b9df53762f8eb3ace93b8018b7dd.rdb
  OMA/inst/pages/quality_control_cache/html/contaminant_prevalence_9460b9df53762f8eb3ace93b8018b7dd.rdx
  OMA/inst/pages/quality_control_cache/html/replace_missing_values_a449fdd2883aca231f5c81d51452fd66.RData
  OMA/inst/pages/quality_control_cache/html/replace_missing_values_a449fdd2883aca231f5c81d51452fd66.rdb
  OMA/inst/pages/quality_control_cache/html/replace_missing_values_a449fdd2883aca231f5c81d51452fd66.rdx

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OMA’ can be installed ... OK
* checking installed package size ... INFO
  installed size is  9.3Mb
  sub-directories of 1Mb or more:
    assets    3.4Mb
    extdata   1.6Mb
    pages     4.2Mb
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... [2s/2s] OK
* DONE

Status: 1 WARNING
See
  ‘/home/pkgbuild/packagebuilder/workers/jobs/4185/7c22653c61f6e158a318dc9289870954427826e2/OMA.Rcheck/00check.log’
for details.





===============================

 BiocCheck('OMA_0.99.5.tar.gz')

===============================

── Installing OMA ──────────────────────────────────────────────────────────────
✔ Package installed successfully
── OMA session metadata ────────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpB7XkE5/fileeb14567d9d87a/OMA
→ BiocVersion: 3.23
→ Package: OMA
→ PackageVersion: 0.99.5
→ BiocCheckDir: /home/pkgbuild/packagebuilder/workers/jobs/4185/7c22653c61f6e158a318dc9289870954427826e2/OMA.BiocCheck
→ BiocCheckVersion: 1.47.20
→ sourceDir: /tmp/RtmpB7XkE5/fileeb14567d9d87a/OMA
→ installDir: /tmp/RtmpB7XkE5/fileeb1456dc5eaff
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on OMA ────────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
! WARNING: Use biocViews from one category only (one of Software,
ExperimentData, AnnotationData, Workflow)
i Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
! WARNING: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
i NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
i NOTE: Vignette(s) found with missing chunk labels
Found in files:
• stub.Rmd
i NOTE: 'sessionInfo' not found in vignette(s)
Missing from file(s):
• vignettes/stub.Rmd
* Checking whether vignette is built with 'R CMD build'...
* Checking package installation calls in R code...
* Checking for library/require of OMA...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* Checking man page documentation...
* Checking package NEWS...
i NOTE: Consider adding a NEWS file, so your package news will be included in
Bioconductor release announcements.
* Checking unit tests...
i NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
i Maintainer is subscribed to bioc-devel.
* Checking for support site registration...
i Maintainer is registered at support site.
i Package is in the Support Site Watched Tags.
── BiocCheck v1.47.20 results ──────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 2 WARNINGS | i 5 NOTES
i See the OMA.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.

nebbiolo1 BUILD BIN output

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