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URL: https://git.bioconductor.org/packages/AnnotationGx

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.4 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

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Package: AnnotationGx

Version: 0.99.10

RVersion: 4.6

BiocVersion: 3.23

BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationGx

BuildTime: 2 minutes 39.47 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: AnnotationGx_20260818065536

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: AnnotationGx. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘AnnotationGx/DESCRIPTION’ ... OK
* preparing ‘AnnotationGx’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Cellosaurus.Rmd’ using rmarkdown
--- finished re-building ‘Cellosaurus.Rmd’

--- re-building ‘ChEMBL.Rmd’ using rmarkdown

Quitting from ChEMBL.Rmd:64-67 [single-query]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `httr2::resp_body_json()`:
! Unexpected content type "text/html".
• Expecting type "application/json" or suffix "json".
---
Backtrace:
     ▆
  1. └─AnnotationGx::getChemblMechanism("CHEMBL1413")
  2.   └─base::lapply(...)
  3.     └─AnnotationGx (local) FUN(X[[i]], ...)
  4.       └─AnnotationGx:::.build_chembl_request(...)
  5.         ├─checkmate::assert_choice(...)
  6.         │ └─checkmate::checkChoice(x, choices, null.ok, fmatch)
  7.         │   └─checkmate::qassert(choices, "a")
  8.         └─AnnotationGx::getChemblResourceFields(resource)
  9.           └─AnnotationGx:::.chembl_resource_schema(resource)
 10.             └─AnnotationGx:::.cache_fetch(...)
 11.               └─AnnotationGx (local) FUN()
 12.                 └─AnnotationGx:::.parse_resp_json(...)
 13.                   └─httr2::resp_body_json(resp, simplifyVector = simplifyVector)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ChEMBL.Rmd' failed with diagnostics:
Unexpected content type "text/html".
• Expecting type "application/json" or suffix "json".
--- failed re-building ‘ChEMBL.Rmd’

--- re-building ‘Introduction.Rmd’ using rmarkdown
--- finished re-building ‘Introduction.Rmd’

--- re-building ‘OncoTree.Rmd’ using rmarkdown
--- finished re-building ‘OncoTree.Rmd’

--- re-building ‘PubChemAPI.Rmd’ using rmarkdown
--- finished re-building ‘PubChemAPI.Rmd’

--- re-building ‘Unichem.Rmd’ using rmarkdown
--- finished re-building ‘Unichem.Rmd’

SUMMARY: processing the following file failed:
  ‘ChEMBL.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output

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