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Snapshot Date: 
URL:  https://git.bioconductor.org/packages/enrichmet
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo1 Linux (Ubuntu 24.04.4 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo1 Summary

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Package: enrichmet
Version: 0.99.12
RVersion: 4.6
BiocVersion: 3.23
BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data enrichmet
BuildTime: 0 minutes 20.98 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: enrichmet_20260918214300
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: enrichmet. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘enrichmet/DESCRIPTION’ ... OK
* preparing ‘enrichmet’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Tutorial.Rmd’ using rmarkdown

Quitting from Tutorial.Rmd:128-175 [case-study]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `BiocFileCache::bfcrpath()`:
! all(rids %in% bfcrid(x)) is not TRUE
---
Backtrace:
    ▆
 1. └─enrichmet::fetch_kegg_pathway_metabolites(organism = "hsa")
 2.   └─enrichmet::get_cached_file(pathway_url)
 3.     ├─BiocFileCache::bfcrpath(bfc, rids = rid)
 4.     └─BiocFileCache::bfcrpath(bfc, rids = rid)
 5.       └─base::stopifnot(all(rids %in% bfcrid(x)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Tutorial.Rmd' failed with diagnostics:
all(rids %in% bfcrid(x)) is not TRUE
--- failed re-building ‘Tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘Tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output
 
                    			
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