Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/JASPAR

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.4 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

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Package: JASPAR

Version: 0.99.7

RVersion: 4.6

BiocVersion: 3.23

BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data JASPAR

BuildTime: 1 minutes 11.14 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: JASPAR_20261104093301

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: JASPAR. Starting Build package.

PostProcessing: Finished Git clone. Package type: AnnotationData. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘JASPAR/DESCRIPTION’ ... OK
* preparing ‘JASPAR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘JASPAR.Rmd’ using rmarkdown

Quitting from JASPAR.Rmd:125-128 [retrieve]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Could not retrieve JASPAR2024 (AnnotationHub record AH121720).
  reason: HTTP 500 Internal Server Error.
  A failed download is not cached, so you can try again later.
---
Backtrace:
    ▆
 1. └─JASPAR::JASPAR(version = "JASPAR2024", hub = ah)
 2.   └─methods::new("JASPAR", version = version, hub = hub)
 3.     ├─methods::initialize(value, ...)
 4.     └─JASPAR (local) initialize(value, ...)
 5.       └─JASPAR (local) .local(.Object, ...)
 6.         └─JASPAR:::.retrieveJASPAR(hub, id, version, local)
 7.           └─JASPAR (local) failedDownload(got)
 8.             └─JASPAR (local) fail(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'JASPAR.Rmd' failed with diagnostics:
Could not retrieve JASPAR2024 (AnnotationHub record AH121720).
  reason: HTTP 500 Internal Server Error.
  A failed download is not cached, so you can try again later.
--- failed re-building ‘JASPAR.Rmd’

SUMMARY: processing the following file failed:
  ‘JASPAR.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output

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